Coronavirus (COVID-19) Collection
Time from last immunity event against infection during Omicron-dominant period in Malaysia
The SARS-CoV-2 Omicron variant (B.1.1.529) and its prominent sublineages continue to be the dominant strains (>98%) circulating globally since February 2022 [1–3]. The spike mutations of Omicron resulted in higher viral transmissibility and capability to escape neutralizing antibodies from vaccinated sera [4]. Immune evasion is evident because a higher number of breakthrough and reinfection cases were observed during the Omicron-dominant period [5,6]. Symptomatic COVID-19 cases increased as studies found moderate booster effectiveness against Omicron infection, whereas the effectiveness against severe outcomes was largely preserved [7,8].Community engagement in Ebola outbreaks in sub-Saharan Africa and implications for COVID-19 control: A scoping review
The Ebola virus is the etiological agent of the Ebola virus disease (EVD), a hemorrhagic fever that occurs in epidemics in the West and Equatorial Africa [1]. The virus was named after the river ‘Ebola’ in the Democratic Republic of Congo, where the first EVD outbreak occurred in 1976. According to Khalafallah et al. [2], it is an enveloped, negative-sense, single-stranded RNA virus belonging to the genus Ebolavirus and the Filoviridae family. There are five species of Ebola viruses: Zaire, Bundibugyo, Sudan, Côte d'Ivoire (Taï Forest), and Reston [3].COVID-19 and diarrhea: putative mechanisms and management
Since December 2019, COVID-19 has become a global threat to public health and the economy. The main causative agent of this disease, SARS-CoV-2, first appeared in Wuhan city of China and the World Health Organization declared it a global pandemic on March 2020 (Huang et al., 2020). Along with a great toll on economic growth and interruption of the general lifestyle of people, COVID-19 has become one of the major public health crises infecting around 533 million people till June 12, 2022, taking more than 6.3 million lives reported from 226 countries (World Health Organization, 2022).Post-acute symptoms 3-15 months after COVID-19 among unvaccinated and vaccinated individuals with a breakthrough infection
Vaccination represents the most important strategy to prevent infection, severe complications, and death caused by SARS-CoV-2 (Feikin et al., 2022). SARS-CoV-2 vaccination may also reduce the risk of post-acute sequelae of SARS-CoV-2 infection (PASC) (Antonelli et al., 2022; Azzolini et al., 2022; Kuodi et al., 2022), but conflicting results have been presented (Taquet et al., 2022). We aimed to describe self-reported PASC symptoms, including memory and concentration problems, changes in smell and taste, fatigue, and dyspnea, persisting 3-15 months after a positive test in SARS-CoV-2 unvaccinated and vaccinated participants with a breakthrough infection.Clinical outcomes associated with Mu variant infection during the third epidemic peak of COVID-19 in Colombia
By July 2022, four COVID-19 epidemic peaks and 210 lineages have been registered in Colombia, including several variants of interest and concern (INS, 2022). However, a higher number of cases and deaths occurred during the third epidemic peak, when the B.1.621 (Mu) variant was associated with 50% of the cases in the country (Álvarez-Díaz et al., 2022a). Although several factors in the clinical history of patients with COVID-19 have been associated with a severe or fatal outcome, including comorbidities, age, and smoking history (Zhang et al.Immunogenicity and efficacy of COVID-19 vaccines in people living with HIV: a systematic review and meta-analysis
The transmission of SARS-CoV-2 has led to the ongoing global COVID-19 pandemic. By August 19, 2022, more than 590 million have had confirmed COVID-19 and more than 6 million have died worldwide (World Health Organization, 2022). The morbidity and mortality from COVID-19 and its complications and large-scale economic disruption have prompted an unprecedented pace in highly efficacious vaccine development (Berlin et al., 2020; Merad et al., 2022). As of August 19, 2022, a total of 12.4 billion vaccine doses have been administered (World Health Organization, 2022), and the most widely used are messenger RNA (mRNA) vaccines, including BNT162b2 (Pfizer-BioNTech, New York, NY, USA-Mainz, Germany) and mRNA-1273 (Moderna, Cambridge, MA, USA) vaccines and viral vector vaccines, such as Ad26.CoV2.S (Johnson & Johnson, New Brunswick, NJ, USA), ChAdOx (AstraZeneca, Cambridge, UK), Sputnik V (Gamaleya Research Institute of Epidemiology and Microbiology, Moscow, Russia), and the traditional inactivated virus alum-adjuvanted candidate vaccine CoronaVac (Sinovac, Beijing, China) (Piccaluga et al.Effectiveness of messenger RNA vaccines against infection with SARS-CoV-2 during the periods of Delta and Omicron variant predominance in Japan: the Vaccine Effectiveness, Networking, and Universal Safety (VENUS) study
Vaccination against infection with SARS-CoV-2 in the general population of Japan began on April 12, 2021, and booster vaccination (the third dose) began on December 1, 2021. The Alpha (B.1.1.7) variant was gradually replaced by the Delta (B.1.617.2) variant beginning in June 2021, and the Delta variant accounted for approximately 80% of infections in Japan in August 2021 (National Institute of Infectious Diseases, 2021). The Delta variant predominated until the Omicron (B.1.1.529) variant surged in January 2022 (National Institute of Infectious Diseases, 2022; Ode et al.Non-severe COVID-19 complicated by cytotoxic lesions of the corpus callosum (mild encephalitis/encephalopathy with a reversible splenial lesion): a case report and literature review
Coronavirus disease 2019- (COVID-19-) associated cytotoxic lesions of the corpus callosum (CLOCCs) have been reported as a rare neurological abnormality in severe cases. Here, a case of CLOCCs in the early stages of mild COVID-19 infection during the Omicron BA.1 epidemic is reported along with a literature review.Critical pediatric neurological illness associated with COVID-19 (Omicron BA.2.3.7 variant) infection in Taiwan: immunological assessment and viral genome analysis in tertiary medical center
Since the COVID-19 pandemic outbreak, people all around the world have continued to fight it (Jian et al., 2022). However, as the virus evolves, more variants of concern have been reported (Chung et al., 2022). Patients with COVID-19 infection have also experienced neurological symptoms during the course of the infection (Nordvig et al., 2021). However, severe neurological complications have tended to be more common in children recently (Dilber et al., 2021; Valderas et al., 2022).Monitoring of SARS-CoV-2 circulation using saliva testing in school children in Rome, Italy
Since October 2020, the identification of suspected cases and contact tracing in the Lazio region have been supported by active surveillance initiatives in schools through antigen tests performed mainly on saliva (Bordi et al., 2021; Iwasaki et al., 2020). For the school year 2021-2022, the National Plan implemented the “Plan for monitoring of the circulation of SARS-CoV-2 in primary and lower secondary schools”. The Laboratory of Virology of the National Institute for Infectious Diseases “L. Spallanzani” was involved in the screening of saliva samples collected from students belonging to the local surveillance unit (ASL) RM3 of Rome.Clinical cardiovascular emergencies and the cellular basis of COVID-19 vaccination: from dream to reality?
COVID-19 first emerged in Wuhan, China, in December 2019, resulting in a rapid spread in the outbreak of pneumonia. The pandemic has affected millions of individuals and claimed more than 6 million lives worldwide, leading to massive health, social, and economic issues (Cascella et al., 2022). Patients with COVID-19 often experience fatigue, fever, cough, pneumonia, and acute respiratory distress syndrome at the advanced stages (Shirani et al., 2020). Except for respiratory symptoms, COVID-19 might be directly or indirectly linked to severe cardiovascular complications, such as palpitation, chest pain, and acute cardiovascular injury (Driggin et al.Validation of the NeuMoDx™ SARS-CoV-2 assay with COPAN eNAT® and E&O Viral PCR Sample Solution collection media types in comparison with other validated SARS-CoV-2 RNA assays
Reverse transcriptase polymerase chain reaction (RT-PCR) assays for the detection of SARS-CoV-2 RNA are the gold standard for diagnosis because of their high sensitivity and specificity (Park et al., 2020). Assay validation during the pandemic was challenging because of the need for rapid implementation of novel tests (Vandenberg et al., 2021).Admissions to a large tertiary care hospital and Omicron BA.1 and BA.2 SARS-CoV-2 polymerase chain reaction positivity: primary, contributing, or incidental COVID-19
Monitoring national hospitalization rates for COVID-19 has been essential throughout the pandemic to guide public health decision-making and to evaluate vaccine efficacy. However, with the rapid worldwide spread of the SARS-CoV-2 Omicron variant of concern (associated with a decreased severity) and increasing immunity against SARS-CoV-2, interpreting the true impact of these hospitalization rates has been complicated (Viana et al., 2022; World Health Organization, 2021).Assessing the proportion of the Danish population at risk of clinically significant drug-drug interactions with new oral antivirals for early treatment of COVID-19
Infection with SARS-CoV-2 usually causes mild to moderate respiratory disease. However, elderly patients and those with underlying chronic medical conditions are at high risk of progressing to severe COVID-19 (Ko et al., 2021; Thakur et al., 2021).Is a single dose of ChAdOx1 nCoV‐19 vaccine (AZD1222) enough for people with prior SARS‐CoV‐2 infection or baseline seropositive status?
At present, the most effective strategy against the COVID-19 pandemic is to reach a point where the majority of the population is immune, either from natural infection or vaccination. Complete vaccination is a herculean task in a populous country such as India due to limited vaccine availability. Two doses are needed for most vaccines, where the second dose acts as a booster. Alternatively, SARS-CoV-2 infection could act as a natural vaccine (Prime dose) after which, one dose could act as a booster dose and may give adequate immunity.A metropolitan-scale, three-dimensional agent-based model to assess the effectiveness of the COVID-19 Omicron wave interventions in a hyperdense city: a case study of Hong Kong
Despite its stringent containment measures, Hong Kong has experienced a most challenging COVID-19 wave due to the Omicron variant (Mallapaty, 2022). Implementing a citywide ‘compulsory universal testing’ (CUT) and a citywide lockdown was a subject of debate in March 2022 (South China Morning Post, 2022).When to test for COVID-19 using real-time reverse transcriptase polymerase chain reaction: a systematic review
By the end of 2019, a new enveloped RNA betacoronavirus was identified as responsible for episodes of a novel type of pneumonia in Wuhan, China. Called severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), it quickly spread to regions beyond China and later caused a global pandemic (Phan et al., 2020). In February 2020, the World Health Organization (WHO) named the disease caused by this pathogen COVID-19. COVID-19 has a varied clinical spectrum (World Health Organization, 2020b). Affected patients may be asymptomatic or develop various symptoms and complications, ranging from cough, myalgia, and headache to secondary infections, shock, and respiratory failure.Humoral and adaptive immune responses to the SARS-CoV-2 vaccine
Vaccines against SARS-CoV-2 prevent infection and adverse outcomes from SARS-CoV-2 (Olliaro et al., 2021). Elicitation of high affinity and durable protective antibody responses is a hallmark of a successful humoral immune response to vaccination (Turner et al., 2021). Antibody responses decline sharply at six months, particularly after SARS-CoV-2 mRNA vaccines (Collier et al., 2021). A recent study showed that after 20 weeks or more, the vaccination with two doses is effective against COVID-19–related hospitalization and death with a waning of the clinical protection in older adults and fragile/co-morbid patients (Andrews et al., 2022).SARS-CoV-2 intra-host evolution during prolonged infection in an immunocompromised patient
During the SARS-CoV-2 pandemic, several cases of prolonged infections were reported in immunosuppressed patients (Dolan et al., 2021). Most of these cases revealed an intra-host viral evolution, which allows the virus to accumulate mutations faster than during normal inter-host transmission (Avanzato et al., 2020; Leung et al., 2022). During these prolonged infections, SARS-CoV-2 can acquire mutations at key epitopes in the Spike (S) protein, potentially affecting virus replication, infectivity, and antigenicity, which are common to the variants of concern (VOCs) (European Centre for Disease Prevention and Control, 2022).Benefits of plasma exchange on mortality in patients with COVID-19: a systematic review and meta-analysis
The COVID-19 pandemic is the worst in more than 100 years, causing numerous infections and deaths worldwide. Despite the use of multiple drugs with different mechanisms, mortality from COVID-19 remains high, especially in critically ill patients with acute respiratory distress syndrome (ARDS), sepsis, and associated cytokine release syndrome (CRS) (Cegolon et al., 2022; Cegolon et al., 2020; Memish et al., 2021). Therapeutic plasma exchange (TPE) is a safe and effective method for treating various diseases by removing pathological substances and replenishing the deficient plasma components (Cegolon et al., 2022; Fernández-Zarzoso et al., 2019).Invasive Pneumococcal Disease diminish during the onset of COVID-19 in Japan between 2019 and 2022
Streptococcus pneumoniae can cause invasive pneumococcal disease (IPD) at a patient's sterile site, including the cerebrospinal fluid and blood, and commonly presents with septicemia, meningitis, and pneumonia (Dowell et al., 2003). In Japan, both children and older individuals receive public support for pneumococcal vaccination. Pneumococcal vaccine coverage has been increased since the launch of the vaccine program (Naito et al., 2020).Risk Factors Associated with Severe/Critical COVID-19 in People Living with HIV-1
Risk factors have been described as associated with severe forms of COVID-19 (Zhang et al., 2020). Persons living with HIV-1 (PLWH1) often carry such comorbidities. As shown by Bhaskaran et al (2021), PLWH1 are at a greater risk of developing a severe form of COVID-19. Our objective was to determine the characteristics associated with the development of a severe or critical form of COVID-19 in a cohort of PLWH1 who were followed up at the Bichat-Claude Bernard University Hospital in Paris, France.Real-world effectiveness of COVID-19 vaccination among children in Italy
In this study, we analyzed the clinical efficacy of mRNA-based COVID-19 vaccines among Italian children aged 5 to 11 years, using data published by the National Institute of Health. Vaccination status was associated with a reduced risk of COVID-19–related hospitalizations and intensive care unit (ICU) admissions, which were 41% (odds ratio, 0.59; 95% confidence interval [CI], 0.46-0.77) and 68% (odds ratio, 0.32; 95% CI, 0.04-2.63), respectively, lower in children who completed the vaccination cycle <120 days than in the unvaccinated matched population.High population burden of Omicron variant (B.1.1.529) is associated with the emergence of severe hepatitis of unknown etiology in children
The Omicron variant (B.1.1.529) emerged in late 2021, causing a widespread epidemic across the world, including in countries that had taken containment strategy with “zero-COVID” policy (Petersen et al., 2022). In industrialized countries that have experienced major extensive epidemics of Omicron, substantial fraction of the population was exposed, including children. For instance, a published seroepidemiological study in the United States indicated that approximately 75% of children have been infected by the end of February 2022 (Clarke et al., 2022).The role of children in household transmission of COVID-19: a systematic review and meta-analysis
As of April 29, 2022, there have been 510.2 million confirmed COVID-19 cases and 6.2 million confirmed deaths worldwide, and individuals around the world are still experiencing the aftermath of the fourth wave of the pandemic, which was caused by the Omicron variant of SARS-CoV-2 (WHO COVID-19 Dashboard Data, 2022).
