Coronavirus (COVID-19) Collection
Outcomes of laboratory-confirmed SARS-CoV-2 infection during resurgence driven by Omicron lineages BA.4 and BA.5 compared with previous waves in the Western Cape Province, South Africa
The Omicron SARS-CoV-2 variant of concern has been dominant globally since November 2021, with several sublineages causing surges in infections (Iketani et al., 2022; Tegally et al., 2022; Viana et al., 2022). South Africa experienced an initial large BA.1 infection surge from November 2021 to January 2022. BA.1 was then replaced by BA.2 but with no increase in cases numbers, and this was followed by a BA.4/BA.5 infection surge between April and June 2022 (Tegally et al., 2022; Viana et al., 2022).SARS-CoV-2 antibodies persist up to 12 months after natural infection in healthy employees working in non-medical contact-intensive professions
Since the start of the COVID-19 pandemic in early 2020, over 564 million confirmed cases and over 6 million deaths have been reported globally (July 22, 2022) [33]. In the Netherlands (total population: 17.6 million), 8.3 million inhabitants have officially been diagnosed with COVID-19 [34]. This number is an underestimation of the actual number of cases because not all people were tested for severe SARS-CoV-2 infections. Hence, a significant percentage of the population has developed natural immunity against SARS-CoV-2 at some point during the pandemic [2].Safety and immunogenicity of a third dose of COVID-19 protein subunit vaccine (CovovaxTM) after homologous and heterologous two-dose regimens
The Omicron variant (B.1.1.529) of SARS-CoV-2 was first identified in November 2021 (Viana et al., 2022) and has dramatically increased the transmission of COVID-19 worldwide. The COVID-19 vaccine protects against serious disease, hospitalization, and death. However, vaccination does not entirely prevent infection and transmission to others. Massive two-dose vaccination campaigns cannot prevent breakthrough infections caused by the variants (Cele et al., 2022; Kuhlmann et al., 2022). A third dose is recommended to obtain high immunity against the Omicron variant and its subvariants.Open-label phase I/II clinical trial of SARS-CoV-2 receptor binding domain-tetanus toxoid conjugate vaccine (FINLAY-FR-2) in combination with receptor binding domain-protein vaccine (FINLAY-FR-1A) in children
Protecting children against COVID-19 is pivotal for controlling virus dissemination and reducing disease incidence. COVID-19 cases and hospitalizations among children and adolescents, firstly driven by the Delta variant and recently by Omicron, have risen sharply, even in countries with high adult vaccination coverage (Delahoy et al., 2021; Elliott et al., 2022). This context has accelerated the clinical trials of anti-SARS-CoV-2 vaccines for children (Ali et al., 2021; Frenck et al., 2021; Han et al., 2021; Wallace et al., 2021; Walter et al., 2021; Xia et al., 2022).Anakinra or high-dose corticosteroids in COVID-19 pneumonia patients who deteriorate on low-dose dexamethasone: an observational study of comparative effectiveness
Some patients with COVID-19 pneumonia display clinical and laboratory signs of a hyperinflammatory response, including markedly elevated serum C-reactive protein (CRP) and ferritin levels, followed by rapid respiratory status decompensation and progression to multisystem organ failure. These observations led to the use of varying doses of corticosteroids and targeted anti-cytokine agents, including anakinra, an anti-interleukin (IL)-1 treatment, early in the pandemic.A comprehensive characterization of patients diagnosed with post-COVID-19 condition in Sweden 16 months after the introduction of the International Classification of Diseases Tenth Revision diagnosis code (U09.9): a population-based cohort study
Two years into the COVID-19 pandemic, many questions remain regarding patients with prolonged symptoms after SARS-CoV-2 infection. Although several studies have described post-COVID-19 complications and symptoms in different settings and populations (Ayoubkhani et al., 2021; Blomberg et al., 2021; Havervall et al., 2021; Tran et al., 2022; Westerlind et al., 2021), it is difficult to compare results and draw conclusions due to the substantial heterogeneity between studies (Michelen et al., 2021).Reduction in severity and mortality in COVID-19 patients owing to heterologous third and fourth-dose vaccines during the periods of delta and omicron predominance in Thailand
As of July 30, 2022, the COVID-19 pandemic caused by SARS-CoV-2 has led to more than 582 million confirmed cases globally with more than 170 million in Asia and almost 5 million in Thailand alone (Mathieu et al., 2022). This has unfortunately resulted in almost 6.4 million deaths worldwide, 1.5 million deaths across Asia, and over 31,000 deaths in Thailand (Mathieu et al., 2022). While public health measures like wearing masks, social distancing, and appropriate hygiene measures were able to limit the spread of SARS-CoV-2, the rapid development and deployment of vaccines were responsible for reducing the clinical impact of COVID-19 substantially (Doroshenko, 2021; Moore et al.Comparative analysis of elderly hospitalized patients with COVID-19 or influenza A H1N1 virus infections
The SARS-CoV-2, SARS-CoV, Middle East respiratory syndrome coronavirus (MERS-CoV), and influenza A viruses are major pathogens that damage the respiratory system and can produce outbreaks of SARS, MERS, COVID‐19, and influenza A H1N1 virus pneumonia, respectively. SARS-CoV-2, SARS-CoV, and Middle East respiratory syndrome coronavirus are from the same genus and share many virological and epidemiological similarities. However, COVID-19 shows more similarities with influenza A H1N1 virus infections in the pattern and scale of spread than with SARS or MERS.A large series of molecular and serological specimens to evaluate mother-to-child SARS-CoV-2 transmission: a prospective study from the Italian Obstetric Surveillance System
The ongoing SARS-CoV-2 pandemic is characterized by multiple epidemic waves associated with different viral strains with diverse transmissibility and lethality. The previous highly pathogenic SARS-CoV-1 and middle east respiratory syndrome coronavirus were associated with poor obstetric outcomes (Schwartz and Graham, 2020). Given the importance of understanding COVID-19’s impact on pregnant women, fetuses, and newborns, the Italian Obstetric Surveillance System (ItOSS), coordinated by the Istituto Superiore di Sanità (Italian National Institute of Health-ISS), launched a nationwide population-based, prospective cohort study aimed at analyzing cases of SARS-CoV-2 infection in pregnant women with the purpose to provide useful indications to guide decision makers and support clinical practice (Donati et al.Viable SARS-CoV-2 detected in the air of hospital rooms of patients with COVID-19 with an early infection
COVID-19 is caused by the highly transmissible SARS-CoV-2. Understanding the role of surface and air contamination near patients with COVID-19 in the transmission of SARS-CoV-2 is essential to ensure the prevention of SARS-CoV-2 transmission. SARS-CoV-2 RNA has been detected on surfaces and in the air in hospitals (Dinoi et al., 2022; Gonçalves et al., 2021). However, only a few studies have recovered viable SARS-CoV-2 from the air collected near the patients with COVID-19 (Lednicky et al., 2020, 2021; Vass et al.High prevalence of SARS-CoV-2 antibodies in pregnant women after the second wave of infections in the inner-city of Johannesburg, Gauteng Province, South Africa
In South Africa, by the end of the second COVID-19 wave in early February 2021, which driven largely by the Beta variant (501Y.V2), almost 1.5 million COVID-19 cases and 47,000 deaths were recorded (National Institute for Communicable Diseases [NICD], 2021). By the end of September 2021, as South Africa exited the third wave, which was dominated by the Delta variant, just over 2.9 million diagnosed cases and more than 87,000 COVID-19-related deaths were reported (NDoH, 2021). Of these, more than one-third of cases and a quarter of deaths were from the Gauteng Province, the most densely populated province in South Africa, with the City of Johannesburg accounting for almost one-third of diagnosed cases (NDoH, 2021, NICD, 2021).SARS-CoV-2 genomic surveillance in Malaysia: displacement of B.1.617.2 with AY lineages as the dominant Delta variants and the introduction of Omicron during the fourth epidemic wave
Since the declaration of COVID-19 as a pandemic by the World Health Organization in March 2020, COVID-19 continues to be an important health problem worldwide (Gao et al., 2021). The index case of COVID-19 was detected on December 1, 2019, in Wuhan City, Hubei Province, China (Helmy et al., 2020; Valencia, 2020). As of January 2022, there were 380 million COVID-19 cases, with a mortality rate of 1.5% (Worldometer, 2022). COVID-19 is caused by SARS-CoV-2, an enveloped, nonsegmented, positive-sense RNA β-coronavirus (Zhou et al.Booster dose of SARS-CoV-2 messenger RNA vaccines strengthens the specific immune response of patients with rheumatoid arthritis: A prospective multicenter longitudinal study
Since the COVID-19 pandemic appearance, a global effort has been made to develop effective vaccines to stem SARS-CoV-2 infection through the induction of a coordinated B and T cell immune response (Agrati et al., 2021; Aiello et al., 2022a; Sette and Crotty, 2021, 2022). Humoral immunity consists of antibodies binding the SARS-CoV-2 spike (S) protein that neutralizes the virus, whereas cellular immunity includes virus-specific B and T cells, which provide long-term memory and promptly expand following re-exposure to antigens (Sette and Crotty, 2021, 2022).Baricitinib vs tocilizumab treatment for hospitalized adult patients with severe COVID-19 and associated cytokine storm: a prospective, investigational, real-world study
The ongoing COVID-19 pandemic caused by SARS-CoV-2 has devastated countries. The race to find adequate therapies is ongoing, but significant progress has been made since 2019. Our understanding of COVID-19 pathogenesis revealed the need for targeting the dysregulated immune response. The term cytokine storm first appeared 30 years ago, describing a potentially life-threatening condition triggered by various pathogens, hematologic and immunological disorders, and is characterized by peripheral hyperactivation of T-lymphocytes, resulting in elevated cytokines levels, systemic inflammation, and end-organ damage (Chatenoud et al.High-dose corticosteroids in patients hospitalized for COVID-19 pneumonia: an observational study of comparative effectiveness
The optimal dose of corticosteroids in the treatment of SARS-CoV-2 infection is uncertain, particularly among patients with severe respiratory impairment (The WHO Rapid Evidence Appraisal for COVID-19 Therapies [REACT] Working Group, 2020), and practice remains varied. Recent randomized controlled trials (RCTs) that compared high (12 mg) to low (6 mg) doses of dexamethasone in patients hospitalized for severe COVID-19 pneumonia found no difference in mortality (Bouadma et al., 2022) or were inconclusive (COVID STEROID 2 Trial Group et al.Transmission dynamics of SARS-CoV-2 Omicron variant infections in Hangzhou, Zhejiang, China, January-February 2022
From the end of 2020, multiple variants of concern have emerged during the COVID-19 pandemic. Most recently, the Omicron variant has become dominant worldwide over other strains, with the potential for the emergence of other new variants or subvariants in the future. The Omicron variants have demonstrated increasing transmissibility and therefore are more challenging to control (Kraemer et al., 2021; World Health Organization, 2022). In general, increased transmissibility for a variant indicates an increased transmission strength, a higher transmission speed, or both.Effect of corticosteroids in patients with COVID-19: a Bayesian network meta-analysis
As of August 5, 2022, nearly 600 million persons have been diagnosed with COVID-19, and more than 6 million individuals have died because of this disease (World Health Organization, 2022). Evidence has shown that a severely dysregulated immune response plays a critical role in patients with COVID-19 (Prete et al., 2020; Vabret et al., 2020).Testing for COVID-19 during an outbreak within a large UK prison: an evaluation of mass testing to inform outbreak control
Since the first cases were identified in 2019, COVID-19 has caused a global pandemic which has disrupted economies and caused significant morbidity and mortality. With COVID-19 predominantly spread through aerosols and those in close contact at the highest risk, concern was voiced that institutions such as prisons would be at risk of large outbreaks (Burki, 2020), exacerbated by overcrowding and poor health of imprisoned people (Davies et al., 2020; Fazel et al., 2001). Coupled with difficulties implementing basic infection prevention and control measures because of limited access to handwashing points, crowded conditions, little control over social distancing, and movement of both staff and people, it was expected that prisons would become a hotspot for COVID-19 outbreaks (Burki, 2020).Effects of COVID-19-targeted nonpharmaceutical interventions on children's respiratory admissions in China: a national multicenter time series study
COVID-19 has exerted a profound influence on everyday life and the healthcare system worldwide. Since the outburst of COVID-19 in Wuhan city, China, in January 2020, a series of nonpharmaceutical interventions (NPIs) have been conducted nationwide. The NPIs refer to the combination of mask-wearing, handwashing, and social distancing, such as closing schools and public places, quarantining infected patients and close contacts, and travel restrictions (Fricke et al., 2021; Zhang et al., 2021a). These measures have effectively curbed the large-scale spread of the epidemic, keeping the number of people infected with COVID-19 in China under control (Tang and Abbasi, 2021).Characteristics of long-COVID among older adults: a cross-sectional study
Long-COVID has been reported to affect a substantial portion of survivors of COVID-19, including those who experienced mild acute disease (Carter et al., 2022; Chen et al., 2022; Yan et al., 2021). In many of the cases, the affected individuals experience debilitating symptoms that affect their physical and cognitive function, impairing their quality of life. Recent longer-term follow-up studies show that many individuals do not experience full recovery even 1 year after infection (PHOSP-COVID Collaborative Group, 2022; Zhang et al.Effect of Inactivated SARS-CoV-2 Vaccines and ChAdOx1 nCoV-19 Vaccination to Prevent COVID-19 in Thai Households (VacPrevent trial)
COVID-19 is caused by the SARS-CoV-2 infection and caused the pandemic with high mortality. Household transmission is the most common transmission source in the countries with COVID-19 outbreaks (Pollán et al., 2020). In England, the secondary infection rate is 4-6.4 per 100 households (Hall et al., 2021). The secondary attack rate (SAR) in other countries is 16.3-53% (Grijalva et al., 2020; Li et al., 2020; Singanayagam et al., 2022). The systematic review demonstrated an average of 17% secondary infections (4-45%), and the SAR was 31.1% during the B.1.617.2 outbreak, whereas the high transmissibility in Thai households was 56% (Madewell et al.A global epidemiological analysis of COVID-19 vaccine types and clinical outcomes
SARS-CoV-2 has led to more than 275 million cases of disease and 5 million deaths worldwide. COVID-19 vaccines deployed in many parts of the world since early 2021, albeit unevenly, have been shown to protect vaccinees against disease and mortality (Al Kaabi et al., 2021; Butt et al., 2021; Cheng et al., 2021; Fadlyana et al., 2021; Jara et al., 2021; Li et al., 2021; Rotshild et al., 2021; Sadoff et al., 2021; Tanriover et al., 2021). However, at the time this study was conducted, there was conflicting evidence about the quality and potency of immune protection afforded by COVID-19 messenger RNA (mRNA)-based and adenovirus-vectored vaccines (ADVV) compared with inactivated virus vaccines (IVV) against SARS-CoV-2 pre-Omicron variants (Cheng et al.Effectiveness of the neutralizing antibody sotrovimab among high-risk patients with mild-to-moderate SARS-CoV-2 in Qatar
Several monoclonal antibodies against SARS-CoV-2 have been developed for the treatment of COVID-19 (Miguez-Rey et al., 2022). One of these is sotrovimab, which significantly reduced the risk of COVID-19 hospitalization and death due to infection with pre-Omicron SARS-CoV-2 variants in a randomized clinical trial (Gupta et al., 2021). The United States Food and Drug Administration (FDA) issued an emergency authorization to permit the use of sotrovimab for the treatment of mild-to-moderate COVID-19 in patients at high risk of progression to severe COVID-19 (US Food and Drug Administration, 2022).Diagnostic accuracy of a novel SARS CoV-2 rapid antigen test and usefulness of specimens collected from the anterior nasal cavity
Many health care providers are hopeful regarding COVID-19 testing programs that use accurate rapid antigen tests to reduce the burden on the health care system through early diagnosis of infection (Chen et al., 2021). If performed appropriately, these testing programs can support rapid and accurate decisions with respect to the isolation and treatment of patients with COVID-19 (World Health Organization, 2020a). Currently, various antigen-detecting rapid diagnostic tests (Ag-RDTs) for SARS-CoV-2 are commercially available (Brümmer et al.
