Coronavirus (COVID-19) Collection
Clinical outcomes associated with Mu variant infection during the third epidemic peak of COVID-19 in Colombia
By July 2022, four COVID-19 epidemic peaks and 210 lineages have been registered in Colombia, including several variants of interest and concern (INS, 2022). However, a higher number of cases and deaths occurred during the third epidemic peak, when the B.1.621 (Mu) variant was associated with 50% of the cases in the country (Álvarez-Díaz et al., 2022a). Although several factors in the clinical history of patients with COVID-19 have been associated with a severe or fatal outcome, including comorbidities, age, and smoking history (Zhang et al.Effectiveness of messenger RNA vaccines against infection with SARS-CoV-2 during the periods of Delta and Omicron variant predominance in Japan: the Vaccine Effectiveness, Networking, and Universal Safety (VENUS) study
Vaccination against infection with SARS-CoV-2 in the general population of Japan began on April 12, 2021, and booster vaccination (the third dose) began on December 1, 2021. The Alpha (B.1.1.7) variant was gradually replaced by the Delta (B.1.617.2) variant beginning in June 2021, and the Delta variant accounted for approximately 80% of infections in Japan in August 2021 (National Institute of Infectious Diseases, 2021). The Delta variant predominated until the Omicron (B.1.1.529) variant surged in January 2022 (National Institute of Infectious Diseases, 2022; Ode et al.Critical pediatric neurological illness associated with COVID-19 (Omicron BA.2.3.7 variant) infection in Taiwan: immunological assessment and viral genome analysis in tertiary medical center
Since the COVID-19 pandemic outbreak, people all around the world have continued to fight it (Jian et al., 2022). However, as the virus evolves, more variants of concern have been reported (Chung et al., 2022). Patients with COVID-19 infection have also experienced neurological symptoms during the course of the infection (Nordvig et al., 2021). However, severe neurological complications have tended to be more common in children recently (Dilber et al., 2021; Valderas et al., 2022).Validation of the NeuMoDx™ SARS-CoV-2 assay with COPAN eNAT® and E&O Viral PCR Sample Solution collection media types in comparison with other validated SARS-CoV-2 RNA assays
Reverse transcriptase polymerase chain reaction (RT-PCR) assays for the detection of SARS-CoV-2 RNA are the gold standard for diagnosis because of their high sensitivity and specificity (Park et al., 2020). Assay validation during the pandemic was challenging because of the need for rapid implementation of novel tests (Vandenberg et al., 2021).Admissions to a large tertiary care hospital and Omicron BA.1 and BA.2 SARS-CoV-2 polymerase chain reaction positivity: primary, contributing, or incidental COVID-19
Monitoring national hospitalization rates for COVID-19 has been essential throughout the pandemic to guide public health decision-making and to evaluate vaccine efficacy. However, with the rapid worldwide spread of the SARS-CoV-2 Omicron variant of concern (associated with a decreased severity) and increasing immunity against SARS-CoV-2, interpreting the true impact of these hospitalization rates has been complicated (Viana et al., 2022; World Health Organization, 2021).Assessing the proportion of the Danish population at risk of clinically significant drug-drug interactions with new oral antivirals for early treatment of COVID-19
Infection with SARS-CoV-2 usually causes mild to moderate respiratory disease. However, elderly patients and those with underlying chronic medical conditions are at high risk of progressing to severe COVID-19 (Ko et al., 2021; Thakur et al., 2021).A metropolitan-scale, three-dimensional agent-based model to assess the effectiveness of the COVID-19 Omicron wave interventions in a hyperdense city: a case study of Hong Kong
Despite its stringent containment measures, Hong Kong has experienced a most challenging COVID-19 wave due to the Omicron variant (Mallapaty, 2022). Implementing a citywide ‘compulsory universal testing’ (CUT) and a citywide lockdown was a subject of debate in March 2022 (South China Morning Post, 2022).Invasive Pneumococcal Disease diminish during the onset of COVID-19 in Japan between 2019 and 2022
Streptococcus pneumoniae can cause invasive pneumococcal disease (IPD) at a patient's sterile site, including the cerebrospinal fluid and blood, and commonly presents with septicemia, meningitis, and pneumonia (Dowell et al., 2003). In Japan, both children and older individuals receive public support for pneumococcal vaccination. Pneumococcal vaccine coverage has been increased since the launch of the vaccine program (Naito et al., 2020).Risk Factors Associated with Severe/Critical COVID-19 in People Living with HIV-1
Risk factors have been described as associated with severe forms of COVID-19 (Zhang et al., 2020). Persons living with HIV-1 (PLWH1) often carry such comorbidities. As shown by Bhaskaran et al (2021), PLWH1 are at a greater risk of developing a severe form of COVID-19. Our objective was to determine the characteristics associated with the development of a severe or critical form of COVID-19 in a cohort of PLWH1 who were followed up at the Bichat-Claude Bernard University Hospital in Paris, France.Real-world effectiveness of COVID-19 vaccination among children in Italy
In this study, we analyzed the clinical efficacy of mRNA-based COVID-19 vaccines among Italian children aged 5 to 11 years, using data published by the National Institute of Health. Vaccination status was associated with a reduced risk of COVID-19–related hospitalizations and intensive care unit (ICU) admissions, which were 41% (odds ratio, 0.59; 95% confidence interval [CI], 0.46-0.77) and 68% (odds ratio, 0.32; 95% CI, 0.04-2.63), respectively, lower in children who completed the vaccination cycle <120 days than in the unvaccinated matched population.Early remdesivir to prevent severe COVID-19 in recipients of solid organ transplant: a real-life study from Northern Italy
COVID-19 remains a life-threatening disease for recipients of solid organ transplant (SOT) who might not mount an adequate protective response to vaccination (Sait et al., 2022). With this in mind, it is extremely relevant to deal with the recent SARS-CoV-2 infection in these patients, starting with treatments which may prevent the COVID-19 progression (National Institutes of Health, 2022b).COVID-19 vaccines provide better protection against related pneumonia than previous symptomatic infection
The burden of the COVID-19 pandemic in Mexico has been high and by mid-October 2021, more than 3.7 million laboratory-confirmed cases have been registered, with more than 280 thousand deaths.Using SARS-CoV-2 anti-S IgG levels as a marker of previous infection: example from an Israeli healthcare worker cohort.
Detecting current or previous SARS-CoV-2 infection is an essential component of pandemic management. Beyond case ascertainment and contact tracing, previous infection knowledge determines reinfection risk, the number and timing of vaccine doses required (Abu Jabal et al., 2021; Hansen et al., 2021), and can serve as evidence to attribute postviral symptoms to infection. Determining acute infection status relies on detecting viral DNA through polymerase chain reaction (PCR) or viral proteins through rapid antigen testing which has limited sensitivity (Wölfl-Duchek et al., 2022).Effect of a two-dose vs three-dose vaccine strategy in residential colleges using an empirical proximity network
When SARS-CoV-2 escalated to a pandemic in early 2020, universities and colleges were forced to pivot to virtual instruction. As of fall 2021, many institutions of higher education had reopened, adopting and often mandating mitigation measures like indoor masking, social distancing, regular testing, and vaccination. However, the emergence of the Omicron B.1.1.529 variant in November 2021 disrupted this new routine. The Omicron variant has been shown to be highly transmissible, with researchers estimating the effective reproduction number of Omicron as 3.19 times higher than that of the Delta strain (Ito et al., 2021).Genomic profiles of vaccine breakthrough SARS-CoV-2 strains from Odisha, India
In India, five COVID-19 vaccines are authorized for emergency use, of which the adenovirus-vector based vaccine from Oxford University and AstraZeneca UK, marketed as COVISHIELD, and the indigenous inactivated virus vaccine COVAXIN by Bharat Biotech are majorly deployed through government and private healthcare centers. Both the vaccines pose tolerable safety outcomes and enhanced immune responses (Ella et al., 2021; Voysey et al., 2021). Recent in vitro studies showed that sera from the Pfizer- or the AstraZeneca-vaccinated individuals are less effective in neutralizing the Delta variant compared with the Alpha (B.1.1.7) variant (Planas et al., 2021).COVID-19 vaccination and SARS-CoV-2 Omicron (B.1.1.529) variant: a light at the end of the tunnel?
We read with interest the recent article of Abdullah et al., who concluded that a significantly lower severity of illness associated with the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron B.1.1.529 variant-driven epidemic wave had been observed in Tshwane, South Africa (Abdullah et al., 2021). This agrees with evidence recently published in other studies from South Africa, the United States, and the United Kingdom (Mahase, 2021), which also reported a similar suggestion of decreased pathogenicity associated with this new and highly mutated Omicron lineages (Lippi, Mattiuzzi and Henry, 2021).Number of initial symptoms is more related to long COVID-19 than acute severity of infection: a prospective cohort of hospitalized patients
Post–COVID-19 symptoms experienced by many survivors after infection have a further devastating effect. Reports of risk factors of long COVID-19 are rising, but data including reliable assessment of persistent symptoms through structured face-to-face follow-up visits are scarce (Halpin et al., 2021). Here we report a study assessing risk factors associated with post–COVID-19 symptoms in hospitalized patients, including those requiring intensive care unit (ICU) transfer 4 months after admission. We also provide data on objective measures of COVID-19 severity, for example, oxygen requirement, inflammatory biomarkers, and radiologic findings.Exported cases were infected on the way: A conjecture derived from analysis on Hong Kong monthly exported COVID-19 cases
During this COVID-19 pandemic, imported cases have played the role of triggering outbreaks in their arrival city and exported cases are used to infer the infection risk in their departure city (Imai et al., 2020; Menkir et al., 2021). Hong Kong, as a hub of international travel, faced this situation in particular. However, we argue that in the current phase of the pandemic, the role of exported cases in inferring the infection risk in their departure city loses its power; we use Hong Kong, an international travel hub, as an example.Comparison of the clinical sensitivity and specificity of two commercial RNA SARS-CoV-2 assays
In response to the COVID-19 pandemic, researchers have developed several diagnostic assays for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Reverse transcriptase polymerase chain reaction (RT-PCR) is the gold standard for diagnosis of active SARS-CoV-2 infections because of its high sensitivity and specificity (Park et al., 2020). Automation in molecular diagnostics enables scaling of testing capacity, which is critical for enabling a large number of tests (Eigner et al., 2019).Antibody response after a third dose mRNA-1273 vaccine among vaccinated healthcare workers with two doses of inactivated SARS-CoV-2 vaccine
Health care workers (HCWs) are at the frontline battling against the COVID-19 pandemic and are categorized as a priority target group for COVID-19 vaccines. CoronaVac (Sinovac Life Sciences, China), an inactivated SARS-CoV-2 vaccine, was the initially available vaccine platform and primarily administered to Indonesian HCWs. Although previous clinical trial studies in China (Zhang et al., 2021) and Turkey (Tanriover et al., 2021) have evidenced the immunogenicity of 2-dose CoronaVac, the antibody levels predictive for SARS-CoV-2 protection has declined over time (Mok et al., 2021).Hospitalized patients with breakthrough COVID-19: Clinical features and poor outcome predictors
Vaccine breakthrough SARS-CoV-2 infection, that is, COVID-19 appearing in fully vaccinated patients, is an emerging challenge (Bahl et al., 2021). The severity of the disease in vaccinated patients has not often been described, and data are scarce regarding the groups most at risk and the prognosis and outcomes for patients who are hospitalized. (CDCMMWR, 2021; Tenforde et al., 2021).Independent risk factors of COVID-19 pneumonia in vaccinated Mexican adults
The availability of vaccines against coronavirus disease 2019 (COVID-19) represent a significant step toward ending the pandemic, and most COVID-19 vaccines confer close to 100% reduction in the risk of serious illness or death (Sharma et al. 2021). In Mexico, vaccination of the general population started in mid-February 2021, and by June 2021, 7 COVID-19 vaccines have received approval by health authorities for their application in Mexico: BNT162b2 (Pfizer, Inc./BioNTech), AZD1222 Covishield (AstraZeneca), Gam-COVID-Vac (National Center Gamaleya), CoronaVac (Sinovac Research and Development Co.), Ad5-nCoV Covidecia (CanSino Biologics Inc.), BBV152 Covaxin (Bharat Biotech International Limited), and Ad26.COV2-S (Janssen-Cilag).Exploring the trajectory recovery curve of the number of post-COVID Symptoms: The LONG-COVID-EXP-CM Multicenter Study
Evidence supports that between 35% to 60% of COVID-19 survivors will experience post-COVID-19 symptoms (Fernández-de-las-Peñas et al., 2021). The presence of post-COVID-19 symptoms is associated with worse quality of life (Malik et al., 2022). Almost 90% of studies investigating post-COVID-19 symptoms are cross-sectional (Fernández-de-las-Peñas et al., 2021; Malik et al., 2022). Longitudinal studies assessing symptoms at different follow-up up periods have provided heterogeneous results. Huang et al. (2021) reported a decrease of most post-COVID-19 symptoms, whereas Seeßle et al.COVID-19 and Lassa fever in Nigeria: A deadly alliance?
COVID-19 has become one of the most dangerous pandemics to cause severe problems for humanity in the past decades. SARS-CoV-2, a virus that causes COVID-19, emanated from China in December 2019, when public health officials alerted the World Health Organization (WHO) about pneumonia of an unknown etiology (WHO, 2021; Li et al., 2020). Subsequently, the disease rapidly spread worldwide. Nigeria faces a potential public health crisis owing to the synergistic epidemic of COVID-19 and other infectious diseases (Sherrard-Smith et al., 2020; Bouba et al., 2021).Severe Outcomes, Readmission, and Length of Stay Among COVID-19 Patients with Intellectual and Developmental Disabilities
Intellectual and developmental disabilities (IDDs) are a broad group of conditions characterized by physical impairments and impairments in learning, language, and/or behavior that begin during the developmental period. Comorbidities, immune dysfunction, or difficulty in accessing health care may put individuals with IDD at greater risk of severe COVID-19 outcomes (Kamalakannan et al., 2021). Population-based studies have predominately evaluated mortality risk but not other outcomes including length of stay (LOS) and readmission (Clift et al., 2021; Karpur et al., 2021; Perera et al., 2020; Turk et al., 2020).
